Package: mkde 0.4

mkde: 2D and 3D Movement-Based Kernel Density Estimates (MKDEs)

Provides functions to compute and visualize movement-based kernel density estimates (MKDEs) for animal utilization distributions in 2 or 3 spatial dimensions.

Authors:Jeff A. Tracey [aut], James Sheppard [aut], Jun Zhu [aut], Amit Chourasia [aut], Glenn Lockwood [aut], Matthew Wang [aut], Robert N. Fisher [aut], Robert Sinkovits [aut, cre]

mkde_0.4.tar.gz
mkde_0.4.zip(r-4.5)mkde_0.4.zip(r-4.4)mkde_0.4.zip(r-4.3)
mkde_0.4.tgz(r-4.5-x86_64)mkde_0.4.tgz(r-4.5-arm64)mkde_0.4.tgz(r-4.4-x86_64)mkde_0.4.tgz(r-4.4-arm64)mkde_0.4.tgz(r-4.3-x86_64)mkde_0.4.tgz(r-4.3-arm64)
mkde_0.4.tar.gz(r-4.5-noble)mkde_0.4.tar.gz(r-4.4-noble)
mkde_0.4.tgz(r-4.4-emscripten)mkde_0.4.tgz(r-4.3-emscripten)
mkde.pdf |mkde.html✨
mkde/json (API)

# Install 'mkde' in R:
install.packages('mkde', repos = c('https://sinkovit.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • condor - California condor locations
  • dugong - Dugong locations
  • panda - Giant panda locations

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

1.90 score 40 scripts 277 downloads 1 mentions 28 exports 17 dependencies

Last updated 2 months agofrom:6df718d680. Checks:11 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 09 2025
R-4.5-win-x86_64OKFeb 09 2025
R-4.5-mac-x86_64OKFeb 09 2025
R-4.5-mac-aarch64OKFeb 09 2025
R-4.5-linux-x86_64OKFeb 09 2025
R-4.4-win-x86_64OKFeb 09 2025
R-4.4-mac-x86_64OKFeb 09 2025
R-4.4-mac-aarch64OKFeb 09 2025
R-4.3-win-x86_64OKFeb 09 2025
R-4.3-mac-x86_64OKFeb 09 2025
R-4.3-mac-aarch64OKFeb 09 2025

Exports:computeAreaRastercomputeContourValuescomputeSizeMKDEdeselectLocationsOutsideBoundsdeselectNonMovementStepsestVarMKDEinitializeAreaRasterinitializeDensityinitializeMKDE2DinitializeMKDE3DinitializeMovementDatamkde2Dgridmkde2Dinteractionmkde3Dgridmkde3DinteractionmkdeToTerraplotMKDEsetMaximumZfromConstantsetMaximumZfromRastersetMinimumZfromConstantsetMinimumZfromRasterwriteInterpolatedPathVTKwriteObservedLocationVTKwriteRasterToVTKwriteRasterToXDMFwriteToGRASSwriteToVTKwriteToXDMF

Dependencies:abindclassclassIntDBIe1071KernSmoothmagrittrMASSproxyRcpprlangs2sfstarsterraunitswk

Readme and manuals

Help Manual

Help pageTopics
Movement-based kernel density estimates (MKDEs) in 2 or 3 spatial dimensions.mkde-package mkde
Calculate cell areas from elevation raster.computeAreaRaster
Find thresholds for contour intervalscomputeContourValues
Compute the area or volume of an MKDE.computeSizeMKDE
California condor locationscondor
A RasterLayer containing a digital elevation model (DEM) for the condor datacondordem
A RasterLayer containing a digital elevation model (DEM) for the condor datacondordem120
Flag 3D locations with out-of-bounds z-coordinatesdeselectLocationsOutsideBounds
Flag non-movements so they are excluded from MKDE estimationdeselectNonMovementSteps
Dugong locationsdugong
A RasterLayer containing bathymetry for the dugong datadugongdem
Estimate move variances for 3D MKDE.estVarMKDE
Initialize an area raster for a 2.5D MKDE.initializeAreaRaster
Calculate raster of density values for MKDE.initializeDensity
Set up a 2D MKDE object.initializeMKDE2D
Set up a 3D MKDE object.initializeMKDE3D
Initialize a movement data listinitializeMovementData
Movement-based kernel density estimate (MKDE) in 2D using Rcppmkde2Dgrid
Probability of 2D spatial-temporal interaction.mkde2Dinteraction
Movement-based kernel density estimate (MKDE) in 3D using Rcppmkde3Dgrid
Probability of 3D spatial-temporal interaction.mkde3Dinteraction
MKDE to RasterLayer or RasterStackmkdeToTerra
Giant panda locationspanda
A RasterLayer containing a digital elevation model (DEM) for the panda datapandadem
Make an image plot of an MKDE.plotMKDE
Initialize maximum allowable z-axis coordinates to a constant value.setMaximumZfromConstant
Initialize maximum z-axis value from a rastersetMaximumZfromRaster
Set minimum z-axis value to a constant.setMinimumZfromConstant
Set minimum z-axis values from a rastersetMinimumZfromRaster
Write path to VTK.writeInterpolatedPathVTK
Write observed locations to VTK.writeObservedLocationVTK
Write a 2D raster to XDMF XML wrapper and binary data file.writeRasterToVTK
Write a 2D raster to XDMF XML wrapper and binary data file.writeRasterToXDMF
Write MKDE to a GRASS GIS 3D ASCII raster file.writeToGRASS
Write MKDE to an ASCII Visualization Tool Kit (VTK) structured grid file.writeToVTK
Write 3D MKDE to XDMF XML wrapper and binary data file.writeToXDMF