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  "Title": "2D and 3D Movement-Based Kernel Density Estimates (MKDEs)",
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  "Date": "2024-11-26",
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  "Description": "Provides functions to compute and visualize movement-based\nkernel density estimates (MKDEs) for animal utilization\ndistributions in 2 or 3 spatial dimensions.",
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  "Maintainer": "Robert Sinkovits <sinkovit@sdsc.edu>",
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    },
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      "date": "2024-07-02"
    },
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    "computeContourValues",
    "computeSizeMKDE",
    "deselectLocationsOutsideBounds",
    "deselectNonMovementSteps",
    "estVarMKDE",
    "initializeAreaRaster",
    "initializeDensity",
    "initializeMKDE2D",
    "initializeMKDE3D",
    "initializeMovementData",
    "mkde2Dgrid",
    "mkde2Dinteraction",
    "mkde3Dgrid",
    "mkde3Dinteraction",
    "mkdeToTerra",
    "plotMKDE",
    "setMaximumZfromConstant",
    "setMaximumZfromRaster",
    "setMinimumZfromConstant",
    "setMinimumZfromRaster",
    "writeInterpolatedPathVTK",
    "writeObservedLocationVTK",
    "writeRasterToVTK",
    "writeRasterToXDMF",
    "writeToGRASS",
    "writeToVTK",
    "writeToXDMF"
  ],
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      "title": "California condor locations",
      "object": "condor",
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      ],
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        "x",
        "y",
        "z"
      ],
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      "tojson": true
    },
    {
      "name": "dugong",
      "title": "Dugong locations",
      "object": "dugong",
      "file": "dugong.RData",
      "class": [
        "data.frame"
      ],
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        "time",
        "x",
        "y",
        "z"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "panda",
      "title": "Giant panda locations",
      "object": "panda",
      "file": "panda.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "time",
        "x",
        "y",
        "z"
      ],
      "rows": 147,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "mkde-package",
      "title": "Movement-based kernel density estimates (MKDEs) in 2 or 3 spatial dimensions.",
      "topics": [
        "mkde-package",
        "mkde"
      ]
    },
    {
      "page": "computeAreaRaster",
      "title": "Calculate cell areas from elevation raster.",
      "topics": [
        "computeAreaRaster"
      ]
    },
    {
      "page": "computeContourValues",
      "title": "Find thresholds for contour intervals",
      "topics": [
        "computeContourValues"
      ]
    },
    {
      "page": "computeSizeMKDE",
      "title": "Compute the area or volume of an MKDE.",
      "topics": [
        "computeSizeMKDE"
      ]
    },
    {
      "page": "condor",
      "title": "California condor locations",
      "topics": [
        "condor"
      ]
    },
    {
      "page": "condordem",
      "title": "A RasterLayer containing a digital elevation model (DEM) for the condor data",
      "topics": [
        "condordem"
      ]
    },
    {
      "page": "condordem120",
      "title": "A RasterLayer containing a digital elevation model (DEM) for the condor data",
      "topics": [
        "condordem120"
      ]
    },
    {
      "page": "deselectLocationsOutsideBounds",
      "title": "Flag 3D locations with out-of-bounds z-coordinates",
      "topics": [
        "deselectLocationsOutsideBounds"
      ]
    },
    {
      "page": "deselectNonMovementSteps",
      "title": "Flag non-movements so they are excluded from MKDE estimation",
      "topics": [
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      ]
    },
    {
      "page": "dugong",
      "title": "Dugong locations",
      "topics": [
        "dugong"
      ]
    },
    {
      "page": "dugongdem",
      "title": "A RasterLayer containing bathymetry for the dugong data",
      "topics": [
        "dugongdem"
      ]
    },
    {
      "page": "estVarMKDE",
      "title": "Estimate move variances for 3D MKDE.",
      "topics": [
        "estVarMKDE"
      ]
    },
    {
      "page": "initializeAreaRaster",
      "title": "Initialize an area raster for a 2.5D MKDE.",
      "topics": [
        "initializeAreaRaster"
      ]
    },
    {
      "page": "initializeDensity",
      "title": "Calculate raster of density values for MKDE.",
      "topics": [
        "initializeDensity"
      ]
    },
    {
      "page": "initializeMKDE2D",
      "title": "Set up a 2D MKDE object.",
      "topics": [
        "initializeMKDE2D"
      ]
    },
    {
      "page": "initializeMKDE3D",
      "title": "Set up a 3D MKDE object.",
      "topics": [
        "initializeMKDE3D"
      ]
    },
    {
      "page": "initializeMovementData",
      "title": "Initialize a movement data list",
      "topics": [
        "initializeMovementData"
      ]
    },
    {
      "page": "mkde2Dgrid",
      "title": "Movement-based kernel density estimate (MKDE) in 2D using Rcpp",
      "topics": [
        "mkde2Dgrid"
      ]
    },
    {
      "page": "mkde2Dinteraction",
      "title": "Probability of 2D spatial-temporal interaction.",
      "topics": [
        "mkde2Dinteraction"
      ]
    },
    {
      "page": "mkde3Dgrid",
      "title": "Movement-based kernel density estimate (MKDE) in 3D using Rcpp",
      "topics": [
        "mkde3Dgrid"
      ]
    },
    {
      "page": "mkde3Dinteraction",
      "title": "Probability of 3D spatial-temporal interaction.",
      "topics": [
        "mkde3Dinteraction"
      ]
    },
    {
      "page": "mkdeToTerra",
      "title": "MKDE to RasterLayer or RasterStack",
      "topics": [
        "mkdeToTerra"
      ]
    },
    {
      "page": "panda",
      "title": "Giant panda locations",
      "topics": [
        "panda"
      ]
    },
    {
      "page": "pandadem",
      "title": "A RasterLayer containing a digital elevation model (DEM) for the panda data",
      "topics": [
        "pandadem"
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    },
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      "title": "Make an image plot of an MKDE.",
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      ]
    },
    {
      "page": "setMaximumZfromConstant",
      "title": "Initialize maximum allowable z-axis coordinates to a constant value.",
      "topics": [
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      ]
    },
    {
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      "title": "Initialize maximum z-axis value from a raster",
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      ]
    },
    {
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      "title": "Set minimum z-axis value to a constant.",
      "topics": [
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      ]
    },
    {
      "page": "setMinimumZfromRaster",
      "title": "Set minimum z-axis values from a raster",
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      "topics": [
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      "topics": [
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    },
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      "page": "writeRasterToVTK",
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      "topics": [
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    },
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      "page": "writeRasterToXDMF",
      "title": "Write a 2D raster to XDMF XML wrapper and binary data file.",
      "topics": [
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    },
    {
      "page": "writeToGRASS",
      "title": "Write MKDE to a GRASS GIS 3D ASCII raster file.",
      "topics": [
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    },
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      "page": "writeToVTK",
      "title": "Write MKDE to an ASCII Visualization Tool Kit (VTK) structured grid file.",
      "topics": [
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    },
    {
      "page": "writeToXDMF",
      "title": "Write 3D MKDE to XDMF XML wrapper and binary data file.",
      "topics": [
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      ]
    }
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